Table of Contents

HK J Paediatr (New Series)
Vol 20. No. 3, 2015

HK J Paediatr (New Series) 2015;20:212-214

Clinical Quiz Answer

What is the diagnosis?

YTP Chan, YWY Chu, BHY Chung

In view of global developmental delay, hypotonia and subtle dysmorphic facial features, chromosome microarray (aCGH) was arranged for the child. Deletion of the most distal band of the short arm of chromosome 1 (1p36) was detected. The abnormality is characterised by a copy loss of 4.51 Mb in the region of 1p36.33-p36.31 (Genomic Coordinates [hg18]: Chr1:825513-5332232). Reviewing the clinical features of the child together with the chromosome microarray result, the diagnosis of 1p36 deletion syndrome was made. The result of the chromosome microarray is shown in Figure 2.

Figure 2 Result of the chromosome microarray, the 1p36 deletion is indicated by the arrow. [Courtesy of Dr Anita Kan, whole genome aCGH testing service, Prenatal Diagnostic & Counselling, Tsan Yuk Hospital]

What is 1p36 deletion syndrome?

1p36 deletion syndrome1 accounts for 0.5% to 1.2% of idiopathic intellectual disability.2 It is considered to be one of the most common microdeletion syndromes. Our patient has typical craniofacial features of 1p36 deletion syndrome, including straight eyebrows, deep set eyes, broad nasal root/bridge, midface hypoplasia, long philtrum and pointed chin. Other features, that could also manifest in affected individuals, include microbrachycephaly and large, late - closing anterior fontanelle. Brachydactyly and short feet are common (Table 1). Developmental delay and intellectual disability are universal to all children suffering from this syndrome. Majority are in the range of severe to profound mental retardation. Affected children are particularly weak at language expression. Behavioural disorders are present in 50% of affected individuals. These include poor social interaction, temper tantrums, self-biting, stereotypies and less commonly hyperphagia. Congenital hypotonic is present in 95% of children with this microdeletion syndrome. Nearly all had EEG abnormalities but only 44%-58% had clinical seizures.3 The onset was at a median of 2.75 months old. About 22% of children with seizure developed infantile spasm at a median age of 5 months old. EEG abnormalities include hypsarhythmia to paucity of rhythmic activities.3 About 88% of affected individuals had central nervous system defects - mainly dilatation of lateral ventricles and subarachnoid spaces; cortical atrophy, diffuse brain atrophy; and hypoplasia, thinning or absence of corpus callosum. Cardiac involvement is very common (43-71%). Other findings include eye/vision problems (52%), hearing loss (47%), skeletal anomalies (41%), abnormalities of external genitalia (25%) and renal abnormalities (22%).

Table 1 Clinical findings in 1p36 deletion syndrome. Further delineation of deletion 1p36 syndrome in 60 patients: a recognisable phenotype and common cause of developmental delay and intellectual disability1
  Number Percentage Our Proband
Dysmorphic craniofacial features
Microbrachycepahly 39 65  
Large, late closing anterior fontanelle (N=39) 30 77  
Straight eyebrows 60 100 *
Deep-set eyes 60 100 *
Epicanthus 30 50  
Broad nasal root/bridge 60 100 *
Midface hypoplasia 60 100 *
Posterior rotated/low set/abnormal ears 20 40  
Long philtrum 60 100 *
Pointed chin 60 100 *
Limb/skeletal defects
Brachydactyly/camtodactyly 48 80  
Short feet 48 80  
Skeletal anomalies(N=32) 13 41  
Visceral anomalies
Congenital heart defects (N=48) 34 71  
Noncompaction cardiomyopathy (N=48) 11 23  
Dilated cardiomyopathy (N=48) 2 4  
Gastrointestinal anomalies (N=18) 5 28  
Anal anomalies 2 3  
Genitourinary tract defects
Renal abnormalities (N=18) 4 22  
Abnormalies of external genitalia 15 25  
Neurological findings
Congenital hypotonia 57 95 *
Seizures 26 44  
EEG abnormalities (N=34) 34 100  
Brain abnormalities (US/CT/MRI) (N=49) 43 88  
Eye/vision problems (N=44) 23 52  
Visual inattention (N=44) 28 64  
Sensorineural deafness (N=32) 9 28  
Developmental findings
Developmental delay 60 100 *
Intellectual disability (formally evaluated) 52 100 *
Espressive language (poor/absent) 60 100 *
Behaviour disorders 28 47  
N.B. The total number of patients equals 60 unless otherwise noted. US, ultrasound; CT, computed tomography; MRI, magnetic resonance imaging
(Modified from Battaglia A, Hoyme HE, Dallapiccola B, et al. Further delineation of deletion 1p36 syndrome in 60 patients: a recognisable phenotype and common cause of developmental delay and mental retardation. Pediatrics 2008;121:404-10)1

What are the cardiac implication(s) of 1p36 microdeletion syndrome?

Congenital cardiac anomalies are very common. These consist of atrial septal defects (28%), ventricular septal defects (23%), patent ductus arteriosus (12.8%), valvular anomalies (20.5%), Tetralogy of Fallot (7.7%), Coartation of aorta (5.1%) and Ebstein anomaly (2%). In particular, cardiomyopathy is unusually common in this group of patient (27%) - majority is of the "non-compaction" type; the rest is of the dilated type. Parents have to be counselled on the possible risk of cardiomyopathy as the condition could lead to devastating sequelae. The high incidence of cardiac problems warrants a thorough cardiac evaluation, including auscultation, electrocardiogram and echocardiography, for all children with 1p36 deletion syndrome.

What are the genetic implications of 1p36 deletion syndrome?

There are several mechanisms that can lead to deletion of 1p36 chromosome.4 More than 50% of affected individuals have de novo terminal 1p36 deletion. Approximately 29% have an interstitial deletion. Approximately 12% have complex rearrangements of chromosomes that may involve more than one 1p36 deletion or a 1p36 deletion with duplication. Approximately 7% have a derivative chromosome 1, where the 1p telomere region is replaced by another chromosome end. Risks to family members depend on the mechanism of the deletion. Prenatal testing is available for families who have had a child with 1p36 deletion syndrome or a family in which one parent is a known carrier of a chromosome rearrangement involving 1p36.


We would like to thank the patient and the family for their contribution. Consent from parents was obtained for publication of clinical photos. We would also like to acknowledge SK Yee Medical Research Fund for the funding support.


1. Battaglia A, Hoyme HE, Dallapiccola B, et al. Further delineation of deletion 1p36 syndrome in 60 patients: a recognizable phenotype and common cause of developmental delay and mental retardation. Pediatrics 2008;121:404-10.

2. Heilstedt HA, Ballif BC, Howard LA, Kashork CD, Shaffer LG. Population data suggest that deletions of 1p36 are a relatively common chromosome abnormality. Clin Genet 2003;64:310-6.

3. Bahi-Buisson N, Guttierrez-Delicado E, Soufflet C, et al. Spectrum of epilepsy in terminal 1p36 deletion syndrome. Epilepsia. 2008;49:509-15.

4. Heilstedt HA, Ballif BC, Howard LA, et al. Physical map of 1p36, placement of breakpoints in monosomy 1p36, and clinical characterization of the syndrome. Am J Hum Genet 2003;72:1200-12.


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